JANE
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User:
guest
Sequence
Your EST sequence
upload seq -
seq format -
Fasta
Genbank
Embl
exampleseq -
Homologous Genome/Sequence template
upload seq -
seq format -
Fasta
Genbank
Embl
exampleseq -
Constraints
Expected value -
(default: 0.1)
Min HSP length -
(suggest: 60~100)
Visualization
Zoom factor -
(min:100; small output:700; optimal:300)
About Me
JANE provides a feasible plan for rapid analysis of EST sequences using a related genome as template to align all the ESTs. The homology modeling results in a virtual genome, with annotation for systematical analysis.
Logs
200810 Virtual genome
200808 Profile facing R
200806 Toolkit
200805 ESTs validation
200802 Visualization
200801 Searching pages
200712 Algorithm develop
Links
SRS
Entrez
InGeno
NCBI-BLAST
EBI-WuBLAST2
KEGG
ExPASy