Documents
JANE Tutorial - algorithm
The working flowchart is demontrated in the following figure, Users upload the homologous genome template and sequenced ESTs into Jane software. A heuristic alignment algorithm will compare the sequences and provide an interactive visualization in the browser. With help of the incorporated toolkit, the annotation information can be readily obtained and the sequence can be eventually exported as part of the predicted virtual genome for further analysis.The alogorithm considers the low-score of alignment region besides the typical HSPs, so that the est2genome alignment benefits the sensitivity from this procedure, whereas most of the classical alignment programs ignore the information. Moreover, the potential direction of alignment segments is particularly taken account of, which helps to find a larger scale of alignment region.
JANE Tutorial - demonstration
Version 200812.1 - Download